- 3 oculomotor nucleus
- 3V 3rd ventricle
- 4 trochlear nucleus
- 7 facial nucleus
- 8n vestibulocochlear nerve
- 10 dorsal motor nucleus of vagus
- 12 hypoglossal nucleus
- ac anterior commissure
- aca anterior commissure, anterior
- AHC anterior hypothalamic area, central part
- AHP anterior hypothalamic area, posterior part
- Amb ambiguus nucleus
- AP area postrema
- Aq aqueduct (Sylvius)
- Arc arcuate hypothalamic nucleus
- ATg anterior tegmental nucleus
- B9 B9 5-hydroxytryptamine cells
- Bar Barrington's nucleus
- BST bed nucleus of the stria terminalis
- BSTL bed nucleus of the stria terminalis, lateral division
- BSTM bed nucleus of the stria terminalis, medial division
- BSTV bed nucleus of the stria terminalis, ventral division
- Ce central amygdaloid nucleus
- CG central (periaqueductal) gray
- Cl claustrum
- CLI caudal linear nucleus of the raphe
- CNF cuneiform nucleus
- cp cerebral peduncle, basal part
- Cu cuneate nucleus
- CVL caudoventrolateral reticular nucleus
- DA dorsal hypothalamic area
- Dk nucleus of Darkschewitsch
- DLL dorsal nucleus of the lateral lemniscus
- DM dorsomedial hypothalamic nucleus
- DMC dorsomedial hypothalamic nucleus, compact part
- DMD dorsomedial hypothalamic nucleus, diffuse part
- DPGi dorsal paragigantocellular nucleus
- DR dorsal raphe nucleus
- DTg dorsal tegmental nucleus
- EP entopeduncular nucleus
- EW Edinger-Westphal nucleus
- f fornix
- F nucleus of the fields of Forel
- FF fields of Forel
- fmi forceps minor corpus callosum
- fr fasciculus retroflexus
- Fr1 frontal cortex, area 1
- g7 genu of the facial nerve
- Gi gigantocellular reticular nucleus
- GiA gigantocellular reticular nucleus, alpha part
- GiV gigantocellular reticular nucleus, ventral part
- Gr gracile nucleus
- HDB nucleus of the horizontal limb of the diagonal band
- ic internal capsule
- IL infralimbic cortex
- IO inferior olive
- IP interpeduncular nucleus
- IPA interpeduncular nucleus, apical subnucleus
- KF Kšlliker-Fuse nucleus
- LC locus coeruleus
- LDT laterodorsal tegmental nucleus
- lfp longitudinal fasciculus of the pons
- LH lateral hypothalamic area
- LHb lateral habenular nucleus
- Li linear nucleus of the medulla
- ll lateral lemniscus
- LM lateral mammillary nucleus
- LPB lateral parabrachial nucleus
- LPGi lateral paragigantocellular nucleus
- LPO lateral preoptic area
- LRt lateral reticular nucleus
- LSO lateral superior olive
- LV lateral ventricle
- LVe lateral vestibular nucleus
- lvs lateral vestibulospinal tract
- MCLH magnocellular nucleus of the lateral hypothalamus
- MCPO magnocellular preoptic nucleus
- MdD medullary reticular nucleus, dorsal part
- MdV medullary reticular nucleus, ventral part
- Me5 mesencephalic trigeminal nucleus
- me5 mesencephalic trigeminal tract
- ml medial lemniscus
- mlf medial longitudinal fasciculus
- Mn medial mamillary nucleus
- MP medial mamillary nucleus, posterior
- MnPO median preoptic nucleus
- MnR median raphe nucleus
- Mo5 motor trigeminal nucleus
- MPA medial preoptic area
- MPB medial parabrachial nucleus
- MPO medial preoptic nucleus
- MPOC medial preoptic nucleus, central part
- mt mammillothalamic tract
- MTu medial tuberal nucleus
- MVe medial vestibular nucleus
- opt optic tract
- ox optic chiasm
- Pa paraventricular hypothalamic nucleus
- PBG parabigeminal nucleus
- PCRt parvocellular reticular nucleus
- PDTg posterodorsal tegmental nucleus
- PeF perifornical nucleus
- PH posterior hypothalamic area
- PMD premammillary nucleus, dorsal part
- PMR paramedian raphe
- PMV premammillary nucleus, ventral part
- Pn pontine nuclei
- PnC pontine reticular nucleus, caudal part
- PnO pontine reticular nucleus, oral part
- PnV pontine reticular nucleus, ventral part
- PPT pedunculopontine tegmental nucleus
- Pr5 principal sensory trigeminal nucleus
- PrH prepositus hypoglossal nucleus
- PVA paraventricular thalamic nucleus, anterior part
- py pyramidal tract
- R red nucleus
- RCh retrochiasmatic area
- RMC red nucleus, magnocellular part
- RMg raphe magnus nucleus
- ROb raphe obscurus nucleus
- RPa raphe pallidus (postpyramidal raphe) nucleus
- RPC red nucleus, parvocellular part
- RPn raphe pontis nucleus
- RPO rostral periolivary region
- RR retrorubral nucleus
- RRF retrorubral field
- rs rubrospinal tract
- RtT reticulotegmental nucleus of the pons
- s5 sensory root trigeminal nerve
- SC superior colliculus
- SCh suprachiasmatic nucleus
- scp superior cerebellar peduncle (brachium conjunctivum)
- SHy septohypothalamic nucleus
- SI substantia innominata
- sm stria medullaris of the thalamus
- SN substantia nigra
- SNC substantia nigra, compact part
- SNR substantia nigra, reticular part
- SO supraoptic nucleus
- Sol nucleus of the solitary tract
- sol solitary tract
- SOR supraoptic nucleus, retrochiasmatic (diffuse) part
- sox supraoptic decussation
- sp5 spinal trigeminal tract
- Sp5C spinal trigeminal nucleus, caudal part
- SPO superior paraolivary nucleus
- SpVe spinal vestibular nucleus
- st stria terminalis
- STH subthalamic nucleus
- TM tuberomammillary nucleus
- ts tectospinal tract
- Tz nucleus of the trapezoid body
- VLL ventral nucleus of the lateral lemniscus
- VMH ventromedial hypothalamic nucleus
- VMHC ventromedial hypothalamic nucleus, central part
- VP ventral pallidum
- VTA ventral tegmental area (Tsai)
- VTg ventral tegmental nucleus (Gudden)
- xscp decussation of the superior cerebellar peduncle
- ZI zona incerta
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